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De novo transcriptome assembly
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1	Molecular Ecology, 2310–2323 doi: mecINVITED REVIEWS AND SYNTHESES Add to Reading List Source URL: palumbi.stanford.edu Language: English - Date: 2015-10-01 10:33:37 Biology Molecular biology Genetics RNA-Seq De novo transcriptome assembly Sequence assembly DNA sequencing Transcriptome Single-nucleotide polymorphism Expressed sequence tag Bioinformatics Contig
2	CAREER: ABI: Scaling and Improving de Bruijn graph assembly C. Titus Brown Monday, July 25th, 2011 Keywords: assembly, bioinformatics, next generation sequencing, metagenomics, transcriptomics, mRNAseq. Add to Reading List Source URL: ged.msu.edu Language: English - Date: 2011-12-30 18:05:57 Biology Molecular biology Genetics Bioinformatics DNA sequencing Genomics Biotechnology De novo transcriptome assembly Sequence assembly Metagenomics RNA-Seq Whole genome sequencing
3	Single Molecule, Real-Time Sequencing of Full-length cDNA Transcripts Uncovers Novel Alternatively Spliced Isoforms Tyson A. Clark, Ting Hon, and Elizabeth Tseng Pacific Biosciences, 1380 Willow Road, Menlo Park, CA 9402 Add to Reading List Source URL: www.pacb.com Language: English - Date: 2015-11-09 03:01:00 Molecular biology Rapid amplification of cDNA ends Pacific Biosciences Complementary DNA Alternative splicing Reverse transcription polymerase chain reaction Polymerase chain reaction Transcription Sequencing Single molecule real time sequencing De novo transcriptome assembly RNA-Seq
4	P0487 Rapid Full-Length Iso-Seq cDNA sequencing of Rice mRNA to Facilitate Annotation and Identify Splice-Site Variation Dario Copetti¹ ֿ◌ ², Jianwei Zhang¹, Seunghee Lee¹, Jayson Talag¹, David Kudrna¹, Yeisoo Add to Reading List Source URL: www.pacb.com Language: English - Date: 2015-11-09 02:59:00 Molecular biology RNA-Seq DNA sequencing Sequencing Complementary DNA CDNA library Pacific Biosciences Protein isoform Transcriptome De novo transcriptome assembly
5	4.40 Research article BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower Add to Reading List Source URL: prod.kau.edu.sa Language: English - Date: 2014-09-18 03:42:52
6	Questions on Iqbal et alNature Genetics 44:De novo assembly and genotyping of variants using colored de Bruijn graphs. 1. What where the practical challenges that prompted this paper? What are some of th Add to Reading List Source URL: genome.sph.umich.edu Language: English - Date: 2014-10-26 19:29:42 Bioinformatics Biology Academia Genetics Genotyping Sequence assembly De Bruijn Algorithm DNA read errors De novo transcriptome assembly
7	Genome Assembly Using de Bruijn Graphs Add to Reading List Source URL: genome.sph.umich.edu Language: English - Date: 2012-12-03 03:43:51 Bioinformatics Genomics Genetic mapping Computational biology DNA sequencing K-mer Hybrid genome assembly Genome Human genome De novo transcriptome assembly
8	ContigMaker and SAND: Software Tools for Genome Mapping and Sequencing Akira Suyama1 Akira Ohyama2 Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2008-10-15 04:40:49 Biology Genomics Molecular biology Bioinformatics Genetics Contig DNA sequencing Gene mapping Human genome Hybrid genome assembly De novo transcriptome assembly
9	How many reads/reps/samples • For de novo transcriptome assembly, diﬀ expression • SNP calling • For reference generation?? (20-30M? Francis et al 2013) Add to Reading List Source URL: angus.readthedocs.org Language: English - Date: 2015-08-18 08:24:49
10	De Novo Sequencing, Assembly, and Analysis of the Root Transcriptome of Persea americana (Mill.) in Response to Phytophthora cinnamomi and Flooding Bianca J. Reeksting1,3, Nanette Coetzer2,3, Waheed Mahomed1,3, Juanita Add to Reading List Source URL: www.fabinet.up.ac.za Language: English* - Date: 2014-06-09 06:25:10 Molecular biology Gene expression Computational biology RNA Expressed sequence tag Contig Phytophthora cinnamomi Bioinformatics Transcriptome Biology Genetics Genomics

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